J3_4V8F_028

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V8F|1|DA|G|686, 4V8F|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_028 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0994

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8F|1|DA|C|683
4V8F|1|DA|G|684
4V8F|1|DA|A|685
4V8F|1|DA|G|686
4V8F|1|DA|C|687
4V8F|1|DA|U|688
4V8F|1|DA|A|689
*
4V8F|1|DA|U|773
4V8F|1|DA|A|774
4V8F|1|DA|G|775
*
4V8F|1|DA|C|791
4V8F|1|DA|G|792
4V8F|1|DA|A|793
4V8F|1|DA|G|794

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2