J3_4V8F_035

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_035 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.2031

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8F|1|DA|C|2789
4V8F|1|DA|A|2790
4V8F|1|DA|C|2791
*
4V8F|1|DA|G|2805
4V8F|1|DA|G|2807
4V8F|1|DA|U|2808
4V8F|1|DA|A|2809
4V8F|1|DA|A|2810
4V8F|1|DA|G|2811
*
4V8F|1|DA|C|2889
4V8F|1|DA|G|2891
4V8F|1|DA|A|2892
4V8F|1|DA|G|2893
4V8F|1|DA|G|2894

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DS

50S ribosomal protein L22