J3_4V8F_040
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 4V8F|1|AA|U|271|||C
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8F_040 not in the Motif Atlas
- Homologous match to J3_9DFE_005
- Geometric discrepancy: 0.1289
- The information below is about J3_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8F|1|AA|U|269
4V8F|1|AA|A|270
4V8F|1|AA|A|270|||A
4V8F|1|AA|A|270|||B
4V8F|1|AA|C|270|||C
*
4V8F|1|AA|G|270|||W
4V8F|1|AA|G|270|||X
4V8F|1|AA|G|270|||Y
4V8F|1|AA|U|270|||Z
4V8F|1|AA|C|271|||A
4V8F|1|AA|G|271|||B
4V8F|1|AA|U|271|||C
4V8F|1|AA|G|271
*
4V8F|1|AA|C|366
4V8F|1|AA|G|370
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain AK
- 50S ribosomal protein L9
- Chain AZ
- 50S ribosomal protein L28
Coloring options: