3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4V8F|1|DA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8F_065 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0734
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4V8F|1|DA|C|297
4V8F|1|DA|G|298
4V8F|1|DA|A|299
4V8F|1|DA|A|300
4V8F|1|DA|G|301
*
4V8F|1|DA|C|316
4V8F|1|DA|G|317
4V8F|1|DA|C|318
4V8F|1|DA|C|319
4V8F|1|DA|A|320
4V8F|1|DA|G|321
4V8F|1|DA|A|322
4V8F|1|DA|G|323
4V8F|1|DA|A|324
4V8F|1|DA|G|325
*
4V8F|1|DA|C|337
4V8F|1|DA|G|338
4V8F|1|DA|U|339
4V8F|1|DA|A|340
4V8F|1|DA|G|341

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain DF
50S ribosomal protein L4
Chain DU
50S ribosomal protein L24

Coloring options:


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