J3_4V8F_065
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 4V8F|1|DA|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8F_065 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0734
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8F|1|DA|C|297
4V8F|1|DA|G|298
4V8F|1|DA|A|299
4V8F|1|DA|A|300
4V8F|1|DA|G|301
*
4V8F|1|DA|C|316
4V8F|1|DA|G|317
4V8F|1|DA|C|318
4V8F|1|DA|C|319
4V8F|1|DA|A|320
4V8F|1|DA|G|321
4V8F|1|DA|A|322
4V8F|1|DA|G|323
4V8F|1|DA|A|324
4V8F|1|DA|G|325
*
4V8F|1|DA|C|337
4V8F|1|DA|G|338
4V8F|1|DA|U|339
4V8F|1|DA|A|340
4V8F|1|DA|G|341
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain DF
- 50S ribosomal protein L4
- Chain DU
- 50S ribosomal protein L24
Coloring options: