J3_4V8G_031

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8G_031 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1995

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V8G|1|AA|G|46
4V8G|1|AA|C|47
*
4V8G|1|AA|G|361
4V8G|1|AA|G|362
4V8G|1|AA|A|363
4V8G|1|AA|A|364
4V8G|1|AA|U|365
4V8G|1|AA|C|366
4V8G|1|AA|U|367
*
4V8G|1|AA|A|393
4V8G|1|AA|G|394
4V8G|1|AA|C|395

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S Ribosomal Protein S12

Chain AP

30S Ribosomal Protein S16