J3_4V8G_041

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8G_041 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1503

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V8G|1|AA|U|1073
4V8G|1|AA|G|1074
*
4V8G|1|AA|U|1083
4V8G|1|AA|G|1084
4V8G|1|AA|U|1085
4V8G|1|AA|U|1086
*
4V8G|1|AA|G|1099
4V8G|1|AA|C|1100
4V8G|1|AA|A|1101
4V8G|1|AA|A|1102

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AB

30S Ribosomal Protein S2

Chain AE

30S Ribosomal Protein S5