J3_4V8H_052

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8H_052 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.2173

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V8H|1|CA|C|936
4V8H|1|CA|A|937
4V8H|1|CA|A|938
4V8H|1|CA|G|939
*
4V8H|1|CA|C|1344
4V8H|1|CA|U|1345
4V8H|1|CA|A|1346
4V8H|1|CA|G|1347
4V8H|1|CA|U|1348
4V8H|1|CA|A|1349
4V8H|1|CA|A|1350
*
4V8H|1|CA|U|1372
4V8H|1|CA|G|1373
4V8H|1|CA|A|1374
4V8H|1|CA|A|1375
4V8H|1|CA|U|1376
4V8H|1|CA|A|1377
4V8H|1|CA|C|1378
4V8H|1|CA|G|1379

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CI

30S Ribosomal Protein S9