3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4V8H|1|DA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8H_058 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0581
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4V8H|1|DA|C|297
4V8H|1|DA|G|298
4V8H|1|DA|A|299
4V8H|1|DA|A|300
4V8H|1|DA|G|301
*
4V8H|1|DA|C|316
4V8H|1|DA|G|317
4V8H|1|DA|C|318
4V8H|1|DA|C|319
4V8H|1|DA|A|320
4V8H|1|DA|G|321
4V8H|1|DA|A|322
4V8H|1|DA|G|323
4V8H|1|DA|A|324
4V8H|1|DA|G|325
*
4V8H|1|DA|C|337
4V8H|1|DA|G|338
4V8H|1|DA|U|339
4V8H|1|DA|A|340
4V8H|1|DA|G|341

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DF
50S Ribosomal Protein L4
Chain DY
50S Ribosomal Protein L24

Coloring options:


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