J3_4V8H_059

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V8H|1|DA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8H_059 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0715

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8H|1|DA|G|1344
4V8H|1|DA|C|1345
4V8H|1|DA|G|1346
4V8H|1|DA|G|1347
4V8H|1|DA|G|1348
4V8H|1|DA|A|1349
4V8H|1|DA|C|1350
*
4V8H|1|DA|G|1381
4V8H|1|DA|G|1382
4V8H|1|DA|C|1383
4V8H|1|DA|A|1384
4V8H|1|DA|G|1385
*
4V8H|1|DA|C|1402
4V8H|1|DA|C|1403

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DX

50S Ribosomal Protein L23