J3_4V8I_023

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V8I|1|CA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8I_023 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1063

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V8I|1|CA|C|1237
4V8I|1|CA|A|1238
4V8I|1|CA|A|1239
4V8I|1|CA|U|1240
4V8I|1|CA|G|1241
*
4V8I|1|CA|C|1296
4V8I|1|CA|C|1297
4V8I|1|CA|C|1298
4V8I|1|CA|A|1299
4V8I|1|CA|G|1300
4V8I|1|CA|U|1301
4V8I|1|CA|U|1302
4V8I|1|CA|C|1303
*
4V8I|1|CA|G|1334
4V8I|1|CA|C|1335
4V8I|1|CA|C|1336
4V8I|1|CA|G|1337

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CM

30S Ribosomal Protein S13

Chain CU

30S Ribosomal Protein THX