J3_4V8I_063

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V8I|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8I_063 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.05

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8I|1|DA|C|297
4V8I|1|DA|G|298
4V8I|1|DA|A|299
4V8I|1|DA|A|300
4V8I|1|DA|G|301
*
4V8I|1|DA|C|316
4V8I|1|DA|G|317
4V8I|1|DA|C|318
4V8I|1|DA|C|319
4V8I|1|DA|A|320
4V8I|1|DA|G|321
4V8I|1|DA|A|322
4V8I|1|DA|G|323
4V8I|1|DA|A|324
4V8I|1|DA|G|325
*
4V8I|1|DA|C|337
4V8I|1|DA|G|338
4V8I|1|DA|U|339
4V8I|1|DA|A|340
4V8I|1|DA|G|341

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DY

50S Ribosomal Protein L24