J3_4V8J_017
3D structure
- PDB id
- 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome ram mutation G347U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8J_017 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1027
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8J|1|CA|U|920
4V8J|1|CA|G|921
4V8J|1|CA|G|922
4V8J|1|CA|A|923
*
4V8J|1|CA|U|1216
4V8J|1|CA|A|1217
4V8J|1|CA|C|1218
*
4V8J|1|CA|G|1318
4V8J|1|CA|G|1319
4V8J|1|CA|A|1320
4V8J|1|CA|A|1321
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CG
- 30S ribosomal protein S7
- Chain CI
- 30S ribosomal protein S9
- Chain CM
- 30S ribosomal protein S13
- Chain CU
- 30S ribosomal protein THX
- Chain CV
- Transfer RNA; tRNA
- Chain CW
- Transfer RNA; tRNA
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