J3_4V8J_018
3D structure
- PDB id
- 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome ram mutation G347U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V8J|1|CA|A|952, 4V8J|1|CA|G|953, 4V8J|1|CA|A|955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8J_018 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.0948
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8J|1|CA|U|932
4V8J|1|CA|U|933
4V8J|1|CA|U|934
4V8J|1|CA|A|935
4V8J|1|CA|A|936
4V8J|1|CA|U|937
4V8J|1|CA|U|938
4V8J|1|CA|C|939
*
4V8J|1|CA|G|950
4V8J|1|CA|A|951
4V8J|1|CA|A|952
4V8J|1|CA|G|953
4V8J|1|CA|A|954
4V8J|1|CA|A|955
4V8J|1|CA|C|956
4V8J|1|CA|C|957
4V8J|1|CA|U|958
4V8J|1|CA|U|959
4V8J|1|CA|A|960
4V8J|1|CA|C|961
*
4V8J|1|CA|G|1202
4V8J|1|CA|G|1203
4V8J|1|CA|C|1204
4V8J|1|CA|G|1205
4V8J|1|CA|A|1206
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CJ
- 30S ribosomal protein S10
- Chain CM
- 30S ribosomal protein S13
- Chain CN
- 30S ribosomal protein S14
- Chain CS
- 30S ribosomal protein S19
- Chain CY
- Transfer RNA; tRNA
Coloring options: