J3_4V8J_039

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_039 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.0903

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4V8J|1|BA|G|30
4V8J|1|BA|C|31
*
4V8J|1|BA|G|474
4V8J|1|BA|U|475
4V8J|1|BA|G|476
4V8J|1|BA|A|477
4V8J|1|BA|A|478
4V8J|1|BA|A|479
4V8J|1|BA|A|480
4V8J|1|BA|G|481
*
4V8J|1|BA|C|509
4V8J|1|BA|C|510

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22

Chain BY

50S ribosomal protein L24