J3_4V8N_013
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8N_013 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.093
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8N|1|BA|U|2091
4V8N|1|BA|U|2092
4V8N|1|BA|G|2093
*
4V8N|1|BA|C|2196
4V8N|1|BA|U|2197
4V8N|1|BA|A|2198
4V8N|1|BA|A|2199
4V8N|1|BA|C|2200
*
4V8N|1|BA|G|2223
4V8N|1|BA|G|2224
4V8N|1|BA|A|2225
4V8N|1|BA|C|2226
4V8N|1|BA|A|2227
4V8N|1|BA|G|2228
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain BD
- 50S RIBOSOMAL PROTEIN L2
- Chain BI
- 50S RIBOSOMAL PROTEIN L9
- Chain CD
- 30S RIBOSOMAL PROTEIN S4
Coloring options: