J3_4V8N_069

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_069 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0647

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V8N|1|DA|G|30
4V8N|1|DA|C|31
*
4V8N|1|DA|G|474
4V8N|1|DA|U|475
4V8N|1|DA|G|476
4V8N|1|DA|A|477
4V8N|1|DA|A|478
4V8N|1|DA|A|479
4V8N|1|DA|A|480
4V8N|1|DA|G|481
*
4V8N|1|DA|C|509
4V8N|1|DA|C|510

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24