J3_4V8N_085

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_085 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1631

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V8N|1|CA|U|1073
4V8N|1|CA|G|1074
*
4V8N|1|CA|U|1083
4V8N|1|CA|G|1084
4V8N|1|CA|U|1085
4V8N|1|CA|U|1086
*
4V8N|1|CA|G|1099
4V8N|1|CA|C|1100
4V8N|1|CA|A|1101
4V8N|1|CA|A|1102

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CE

30S RIBOSOMAL PROTEIN S5