J3_4V8P_008
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAUA*UUGCAAUA*UUG
- Length
- 15 nucleotides
- Bulged bases
- 4V8P|1|A1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|C|1564
4V8P|1|A1|A|1565
4V8P|1|A1|U|1566
4V8P|1|A1|A|1567
*
4V8P|1|A1|U|1578
4V8P|1|A1|U|1579
4V8P|1|A1|G|1580
4V8P|1|A1|C|1581
4V8P|1|A1|A|1582
4V8P|1|A1|A|1583
4V8P|1|A1|U|1584
4V8P|1|A1|A|1585
*
4V8P|1|A1|U|1606
4V8P|1|A1|U|1607
4V8P|1|A1|G|1608
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- RPL8
- Chain BF
- RPL7A
- Chain BL
- RIBOSOMAL PROTEIN L15
- Chain BR
- RPL23A
Coloring options: