J3_4V8P_018

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGG*UGAGGGG*CGA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|D1|U|547
4V8P|1|D1|G|548
4V8P|1|D1|G|549
*
4V8P|1|D1|U|618
4V8P|1|D1|G|619
4V8P|1|D1|A|620
4V8P|1|D1|G|621
4V8P|1|D1|G|622
4V8P|1|D1|G|623
4V8P|1|D1|G|624
*
4V8P|1|D1|C|633
4V8P|1|D1|G|634
4V8P|1|D1|A|635

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CC

RPL4

Chain CX

60S RIBOSOMAL PROTEIN L32

Chain DE

RPL6

Chain DH

RPL35A

Chain DO

RPL28