J3_4V8P_024
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAGAG*CAAAGAAAC*GGGAGACAUAA
- Length
- 25 nucleotides
- Bulged bases
- 4V8P|1|D1|A|1666
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|D1|U|1652
4V8P|1|D1|A|1653
4V8P|1|D1|G|1654
4V8P|1|D1|A|1655
4V8P|1|D1|G|1656
*
4V8P|1|D1|C|1665
4V8P|1|D1|A|1666
4V8P|1|D1|A|1667
4V8P|1|D1|A|1668
4V8P|1|D1|G|1669
4V8P|1|D1|A|1670
4V8P|1|D1|A|1671
4V8P|1|D1|A|1672
4V8P|1|D1|C|1673
*
4V8P|1|D1|G|1832
4V8P|1|D1|G|1833
4V8P|1|D1|G|1834
4V8P|1|D1|A|1835
4V8P|1|D1|G|1836
4V8P|1|D1|A|1837
4V8P|1|D1|C|1838
4V8P|1|D1|A|1839
4V8P|1|D1|U|1840
4V8P|1|D1|A|1841
4V8P|1|D1|A|1842
Current chains
- Chain D1
- 26S RRNA
Nearby chains
- Chain CA
- RPL8
- Chain CF
- RPL7A
- Chain DL
- RPL34
- Chain DN
- RPL27
- Chain DP
- RPL38
Coloring options: