J3_4V8P_040
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AGAC*GUUCUAAAGUUAAG*UGAU
- Length
- 22 nucleotides
- Bulged bases
- 4V8P|1|F1|U|2541, 4V8P|1|F1|U|2542, 4V8P|1|F1|A|2545, 4V8P|1|F1|U|2549, 4V8P|1|F1|U|2550
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|F1|A|2524
4V8P|1|F1|G|2525
4V8P|1|F1|A|2526
4V8P|1|F1|C|2527
*
4V8P|1|F1|G|2540
4V8P|1|F1|U|2541
4V8P|1|F1|U|2542
4V8P|1|F1|C|2543
4V8P|1|F1|U|2544
4V8P|1|F1|A|2545
4V8P|1|F1|A|2546
4V8P|1|F1|A|2547
4V8P|1|F1|G|2548
4V8P|1|F1|U|2549
4V8P|1|F1|U|2550
4V8P|1|F1|A|2551
4V8P|1|F1|A|2552
4V8P|1|F1|G|2553
*
4V8P|1|F1|U|2567
4V8P|1|F1|G|2568
4V8P|1|F1|A|2569
4V8P|1|F1|U|2570
Current chains
- Chain F1
- 26S RRNA
Nearby chains
- Chain EA
- RPL8
- Chain EF
- RPL7A
- Chain EY
- RPL37A
- Chain FG
- RPL30
- Chain FL
- RPL34
- Chain FN
- RPL27
Coloring options: