J3_4V8P_045

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAAAC*GAAG*CAAAA

Length

14 nucleotides

Bulged bases

4V8P|1|H1|A|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|H1|U|436
4V8P|1|H1|A|437
4V8P|1|H1|A|438
4V8P|1|H1|A|439
4V8P|1|H1|C|440
*
4V8P|1|H1|G|537
4V8P|1|H1|A|538
4V8P|1|H1|A|539
4V8P|1|H1|G|540
*
4V8P|1|H1|C|642
4V8P|1|H1|A|643
4V8P|1|H1|A|644
4V8P|1|H1|A|645
4V8P|1|H1|A|646

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GX

60S RIBOSOMAL PROTEIN L32

Chain HE

RPL6

Chain HH

RPL35A