J3_4V8P_062

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UU*AGAGC*GGAAGA

Length

13 nucleotides

Bulged bases

4V8P|1|A1|G|1091, 4V8P|1|A1|A|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|A1|U|1012
4V8P|1|A1|U|1013
*
4V8P|1|A1|A|1088
4V8P|1|A1|G|1089
4V8P|1|A1|A|1090
4V8P|1|A1|G|1091
4V8P|1|A1|C|1092
*
4V8P|1|A1|G|1120
4V8P|1|A1|G|1121
4V8P|1|A1|A|1122
4V8P|1|A1|A|1123
4V8P|1|A1|G|1124
4V8P|1|A1|A|1125

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AT

RPL29

Chain BP

60S RIBOSOMAL PROTEIN L21

Chain BV

60S RIBOSOMAL PROTEIN L7