J3_4V8P_072
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUAG*CGAUAGCGAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V8P|1|C2|A|26, 4V8P|1|D1|U|342, 4V8P|1|D1|A|350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_072 not in the Motif Atlas
- Geometric match to J3_5TBW_061
- Geometric discrepancy: 0.0707
- The information below is about J3_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|C2|C|24
4V8P|1|C2|U|25
4V8P|1|C2|A|26
4V8P|1|C2|G|27
*
4V8P|1|D1|C|339
4V8P|1|D1|G|340
4V8P|1|D1|A|341
4V8P|1|D1|U|342
4V8P|1|D1|A|343
4V8P|1|D1|G|344
4V8P|1|D1|C|345
4V8P|1|D1|G|346
4V8P|1|D1|A|347
4V8P|1|D1|A|348
4V8P|1|D1|C|349
4V8P|1|D1|A|350
4V8P|1|D1|A|351
4V8P|1|D1|G|352
4V8P|1|D1|U|353
4V8P|1|D1|A|354
4V8P|1|D1|C|355
*
4V8P|1|D1|G|362
4V8P|1|D1|G|363
4V8P|1|D1|A|364
4V8P|1|D1|A|365
4V8P|1|D1|A|366
4V8P|1|D1|G|367
Current chains
- Chain C2
- 5.8S RRNA
- Chain D1
- 26S RRNA
Nearby chains
- Chain CC
- RPL4
- Chain CS
- RPL26
- Chain DA
- RIBOSOMAL PROTEIN L37
- Chain DB
- RPL39
Coloring options: