J3_4V8P_076

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAUAAG*CGUCAAAGAG*CGUAGUCGG

Length

25 nucleotides

Bulged bases

4V8P|1|D1|A|210, 4V8P|1|D1|C|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|D1|C|184
4V8P|1|D1|A|185
4V8P|1|D1|U|186
4V8P|1|D1|A|187
4V8P|1|D1|A|188
4V8P|1|D1|G|189
*
4V8P|1|D1|C|205
4V8P|1|D1|G|206
4V8P|1|D1|U|207
4V8P|1|D1|C|208
4V8P|1|D1|A|209
4V8P|1|D1|A|210
4V8P|1|D1|A|211
4V8P|1|D1|G|212
4V8P|1|D1|A|213
4V8P|1|D1|G|214
*
4V8P|1|D1|C|226
4V8P|1|D1|G|227
4V8P|1|D1|U|228
4V8P|1|D1|A|229
4V8P|1|D1|G|230
4V8P|1|D1|U|231
4V8P|1|D1|C|232
4V8P|1|D1|G|233
4V8P|1|D1|G|234

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

RPL4

Chain CS

RPL26

Chain DA

RIBOSOMAL PROTEIN L37

Chain DU

RPL13