J3_4V8P_086
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AC*GAUACGC*GAUCU
- Length
- 14 nucleotides
- Bulged bases
- 4V8P|1|E2|U|63, 4V8P|1|E2|C|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_086 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0857
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|E2|A|47
4V8P|1|E2|C|48
*
4V8P|1|E2|G|61
4V8P|1|E2|A|62
4V8P|1|E2|U|63
4V8P|1|E2|A|64
4V8P|1|E2|C|65
4V8P|1|E2|G|66
4V8P|1|E2|C|67
*
4V8P|1|E2|G|97
4V8P|1|E2|A|98
4V8P|1|E2|U|99
4V8P|1|E2|C|100
4V8P|1|E2|U|101
Current chains
- Chain E2
- 5.8S RRNA
Nearby chains
- Chain ER
- RPL23A
- Chain EU
- RPL35
- Chain FA
- RIBOSOMAL PROTEIN L37
- Chain FB
- RPL39
Coloring options: