J3_4V8P_111
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAAACG*CGAAA*UAAUCGUAAUUCCAAA
- Length
- 27 nucleotides
- Bulged bases
- 4V8P|1|F1|A|3154, 4V8P|1|F1|A|3155, 4V8P|1|F1|A|3183, 4V8P|1|F1|A|3227, 4V8P|1|F1|C|3229, 4V8P|1|F1|U|3231, 4V8P|1|F1|U|3234, 4V8P|1|F1|U|3235, 4V8P|1|F1|C|3236, 4V8P|1|F1|C|3237
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|F1|U|3153
4V8P|1|F1|A|3154
4V8P|1|F1|A|3155
4V8P|1|F1|A|3156
4V8P|1|F1|C|3157
4V8P|1|F1|G|3158
*
4V8P|1|F1|C|3180
4V8P|1|F1|G|3181
4V8P|1|F1|A|3182
4V8P|1|F1|A|3183
4V8P|1|F1|A|3184
*
4V8P|1|F1|U|3225
4V8P|1|F1|A|3226
4V8P|1|F1|A|3227
4V8P|1|F1|U|3228
4V8P|1|F1|C|3229
4V8P|1|F1|G|3230
4V8P|1|F1|U|3231
4V8P|1|F1|A|3232
4V8P|1|F1|A|3233
4V8P|1|F1|U|3234
4V8P|1|F1|U|3235
4V8P|1|F1|C|3236
4V8P|1|F1|C|3237
4V8P|1|F1|A|3238
4V8P|1|F1|A|3239
4V8P|1|F1|A|3240
Current chains
- Chain F1
- 26S RRNA
Nearby chains
- Chain E2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EI
- 60S RIBOSOMAL PROTEIN L13A
- Chain FE
- RPL6
- Chain FF
- RPL14
- Chain FH
- RPL35A
Coloring options: