J3_4V8Q_001

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V8Q|1|AA|G|686, 4V8Q|1|AA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1047

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8Q|1|AA|C|683
4V8Q|1|AA|G|684
4V8Q|1|AA|A|685
4V8Q|1|AA|G|686
4V8Q|1|AA|C|687
4V8Q|1|AA|U|688
4V8Q|1|AA|A|689
*
4V8Q|1|AA|U|773
4V8Q|1|AA|A|774
4V8Q|1|AA|G|775
*
4V8Q|1|AA|C|791
4V8Q|1|AA|G|792
4V8Q|1|AA|A|793
4V8Q|1|AA|G|794

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S RIBOSOMAL PROTEIN L34

Chain AD

50S RIBOSOMAL PROTEIN L2