J3_4V8Q_005

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_005 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.079

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V8Q|1|AA|U|2091
4V8Q|1|AA|U|2092
4V8Q|1|AA|G|2093
*
4V8Q|1|AA|C|2196
4V8Q|1|AA|U|2197
4V8Q|1|AA|A|2198
4V8Q|1|AA|A|2199
4V8Q|1|AA|C|2200
*
4V8Q|1|AA|G|2223
4V8Q|1|AA|G|2224
4V8Q|1|AA|A|2225
4V8Q|1|AA|C|2226
4V8Q|1|AA|A|2227
4V8Q|1|AA|G|2228

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S RIBOSOMAL PROTEIN L28

Chain AD

50S RIBOSOMAL PROTEIN L2