J3_4V8Q_011
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_011 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1021
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|U|943
4V8Q|1|BA|G|944
4V8Q|1|BA|G|945
4V8Q|1|BA|A|946
*
4V8Q|1|BA|U|1235
4V8Q|1|BA|A|1236
4V8Q|1|BA|C|1237
*
4V8Q|1|BA|G|1337
4V8Q|1|BA|G|1338
4V8Q|1|BA|A|1339
4V8Q|1|BA|A|1340
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BI
- 30S RIBOSOMAL PROTEIN S9
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
- Chain BU
- 30S RIBOSOMAL PROTEIN THX
- Chain BV
- Transfer RNA; tRNA
- Chain BW
- Transfer RNA; tRNA
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