J3_4V8Q_013

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_013 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1381

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8Q|1|BA|C|990
4V8Q|1|BA|U|991
4V8Q|1|BA|U|992
4V8Q|1|BA|G|993
*
4V8Q|1|BA|C|1045
4V8Q|1|BA|A|1046
4V8Q|1|BA|G|1047
*
4V8Q|1|BA|C|1210
4V8Q|1|BA|U|1211
4V8Q|1|BA|U|1212
4V8Q|1|BA|A|1213
4V8Q|1|BA|C|1214
4V8Q|1|BA|G|1215

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain B2

SMALL PROTEIN B SMPB

Chain BN

30S RIBOSOMAL PROTEIN S14