J3_4V8Q_014
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_014 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0884
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Q|1|BA|C|1063
4V8Q|1|BA|G|1064
4V8Q|1|BA|U|1065
4V8Q|1|BA|C|1066
4V8Q|1|BA|A|1067
4V8Q|1|BA|G|1068
*
4V8Q|1|BA|C|1107
4V8Q|1|BA|G|1108
4V8Q|1|BA|C|1109
4V8Q|1|BA|A|1110
4V8Q|1|BA|A|1111
4V8Q|1|BA|C|1112
4V8Q|1|BA|C|1113
*
4V8Q|1|BA|G|1187
4V8Q|1|BA|A|1188
4V8Q|1|BA|C|1189
4V8Q|1|BA|G|1190
4V8Q|1|BA|A|1191
4V8Q|1|BA|C|1192
4V8Q|1|BA|G|1193
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- 30S RIBOSOMAL PROTEIN S2
- Chain BC
- 30S RIBOSOMAL PROTEIN S3
- Chain BE
- 30S RIBOSOMAL PROTEIN S5
- Chain BG
- 30S RIBOSOMAL PROTEIN S7
- Chain BI
- 30S RIBOSOMAL PROTEIN S9
- Chain BJ
- 30S RIBOSOMAL PROTEIN S10
- Chain BN
- 30S RIBOSOMAL PROTEIN S14
Coloring options: