J3_4V8Q_015
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 4V8Q|1|BA|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_015 not in the Motif Atlas
- Homologous match to J3_4LFB_008
- Geometric discrepancy: 0.1435
- The information below is about J3_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|C|1116
4V8Q|1|BA|G|1117
4V8Q|1|BA|C|1118
*
4V8Q|1|BA|G|1155
4V8Q|1|BA|G|1156
4V8Q|1|BA|A|1157
4V8Q|1|BA|C|1158
*
4V8Q|1|BA|G|1181
4V8Q|1|BA|G|1182
4V8Q|1|BA|A|1183
4V8Q|1|BA|G|1184
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- 30S RIBOSOMAL PROTEIN S2
- Chain BG
- 30S RIBOSOMAL PROTEIN S7
- Chain BI
- 30S RIBOSOMAL PROTEIN S9
- Chain BN
- 30S RIBOSOMAL PROTEIN S14
Coloring options: