3D structure

PDB id
4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGC*GGAC*GGAG
Length
11 nucleotides
Bulged bases
4V8Q|1|BA|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8Q_015 not in the Motif Atlas
Homologous match to J3_4LFB_008
Geometric discrepancy: 0.1435
The information below is about J3_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4V8Q|1|BA|C|1116
4V8Q|1|BA|G|1117
4V8Q|1|BA|C|1118
*
4V8Q|1|BA|G|1155
4V8Q|1|BA|G|1156
4V8Q|1|BA|A|1157
4V8Q|1|BA|C|1158
*
4V8Q|1|BA|G|1181
4V8Q|1|BA|G|1182
4V8Q|1|BA|A|1183
4V8Q|1|BA|G|1184

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BB
30S RIBOSOMAL PROTEIN S2
Chain BG
30S RIBOSOMAL PROTEIN S7
Chain BI
30S RIBOSOMAL PROTEIN S9
Chain BN
30S RIBOSOMAL PROTEIN S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.8344 s
Application loaded.