J3_4V8Q_017

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_017 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0652

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V8Q|1|AA|G|30
4V8Q|1|AA|C|31
*
4V8Q|1|AA|G|474
4V8Q|1|AA|U|475
4V8Q|1|AA|G|476
4V8Q|1|AA|A|477
4V8Q|1|AA|A|478
4V8Q|1|AA|A|479
4V8Q|1|AA|A|480
4V8Q|1|AA|G|481
*
4V8Q|1|AA|C|509
4V8Q|1|AA|C|510

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AU

50S RIBOSOMAL PROTEIN L20

Chain AW

50S RIBOSOMAL PROTEIN L22

Chain AY

50S RIBOSOMAL PROTEIN L24