J3_4V8Q_021

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V8Q|1|AA|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_021 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1281

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V8Q|1|AA|U|269
4V8Q|1|AA|A|270
4V8Q|1|AA|A|271
4V8Q|1|AA|A|271|||A
4V8Q|1|AA|C|271|||B
*
4V8Q|1|AA|G|271|||V
4V8Q|1|AA|G|271|||W
4V8Q|1|AA|G|271|||X
4V8Q|1|AA|U|271|||Y
4V8Q|1|AA|C|271|||Z
4V8Q|1|AA|G|272
4V8Q|1|AA|U|272|||A
4V8Q|1|AA|G|272|||B
*
4V8Q|1|AA|C|366
4V8Q|1|AA|G|370

Current chains

Chain AA

23S ribosomal RNA

Nearby chains