J3_4V8Q_022

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V8Q|1|AA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_022 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1238

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8Q|1|AA|G|1344
4V8Q|1|AA|C|1345
4V8Q|1|AA|G|1346
4V8Q|1|AA|G|1347
4V8Q|1|AA|G|1348
4V8Q|1|AA|A|1349
4V8Q|1|AA|C|1350
*
4V8Q|1|AA|G|1381
4V8Q|1|AA|G|1382
4V8Q|1|AA|C|1383
4V8Q|1|AA|A|1384
4V8Q|1|AA|G|1385
*
4V8Q|1|AA|C|1402
4V8Q|1|AA|C|1403

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AX

50S RIBOSOMAL PROTEIN L23