J3_4V8Q_023
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_023 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.0677
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|AA|G|1424
4V8Q|1|AA|G|1425
4V8Q|1|AA|G|1426
4V8Q|1|AA|A|1427
4V8Q|1|AA|C|1428
4V8Q|1|AA|G|1429
*
4V8Q|1|AA|C|1564
4V8Q|1|AA|C|1565
*
4V8Q|1|AA|G|1568
4V8Q|1|AA|A|1569
4V8Q|1|AA|A|1570
4V8Q|1|AA|A|1571
4V8Q|1|AA|A|1572
4V8Q|1|AA|G|1573
4V8Q|1|AA|C|1574
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 50S RIBOSOMAL PROTEIN L2
Coloring options: