J3_4V8Q_037
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAACGGUCUCGAC*GGACG*CC
- Length
- 21 nucleotides
- Bulged bases
- 4V8Q|1|BY|A|10, 4V8Q|1|BY|G|12, 4V8Q|1|BY|G|13, 4V8Q|1|BY|U|14, 4V8Q|1|BY|C|15
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46173.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Q|1|BY|G|7
4V8Q|1|BY|A|8
4V8Q|1|BY|A|9
4V8Q|1|BY|A|10
4V8Q|1|BY|C|11
4V8Q|1|BY|G|12
4V8Q|1|BY|G|13
4V8Q|1|BY|U|14
4V8Q|1|BY|C|15
4V8Q|1|BY|U|16
4V8Q|1|BY|C|17
4V8Q|1|BY|G|18
4V8Q|1|BY|A|19
4V8Q|1|BY|C|20
*
4V8Q|1|BY|G|58
4V8Q|1|BY|G|59
4V8Q|1|BY|A|60
4V8Q|1|BY|C|61
4V8Q|1|BY|G|62
*
4V8Q|1|BY|C|78
4V8Q|1|BY|C|79
Current chains
- Chain BY
- TMRNA DELA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BL
- 30S RIBOSOMAL PROTEIN S12
- Chain BZ
- ELONGATION FACTOR TU
Coloring options: