J3_4V8U_045

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V8U|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8U_045 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1014

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V8U|1|BA|C|297
4V8U|1|BA|G|298
4V8U|1|BA|A|299
4V8U|1|BA|A|300
4V8U|1|BA|G|301
*
4V8U|1|BA|C|316
4V8U|1|BA|G|317
4V8U|1|BA|C|318
4V8U|1|BA|C|319
4V8U|1|BA|A|320
4V8U|1|BA|G|321
4V8U|1|BA|A|322
4V8U|1|BA|G|323
4V8U|1|BA|A|324
4V8U|1|BA|G|325
*
4V8U|1|BA|C|337
4V8U|1|BA|G|338
4V8U|1|BA|U|339
4V8U|1|BA|A|340
4V8U|1|BA|G|341

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24