3D structure

PDB id
4V8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Thermus thermophilus ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUACC*GGGCGA
Length
27 nucleotides
Bulged bases
4V8X|1|AA|A|975, 4V8X|1|AA|G|976, 4V8X|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8X_004 not in the Motif Atlas
Homologous match to J3_6CZR_062
Geometric discrepancy: 0.1307
The information below is about J3_6CZR_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_59791.1
Basepair signature
cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

4V8X|1|AA|U|955
4V8X|1|AA|U|956
4V8X|1|AA|U|957
4V8X|1|AA|A|958
4V8X|1|AA|A|959
4V8X|1|AA|U|960
4V8X|1|AA|U|961
4V8X|1|AA|C|962
*
4V8X|1|AA|G|973
4V8X|1|AA|A|974
4V8X|1|AA|A|975
4V8X|1|AA|G|976
4V8X|1|AA|A|977
4V8X|1|AA|A|978
4V8X|1|AA|C|979
4V8X|1|AA|C|980
4V8X|1|AA|U|981
4V8X|1|AA|U|982
4V8X|1|AA|A|983
4V8X|1|AA|C|984
4V8X|1|AA|C|985
*
4V8X|1|AA|G|1220
4V8X|1|AA|G|1221
4V8X|1|AA|G|1222
4V8X|1|AA|C|1223
4V8X|1|AA|G|1224
4V8X|1|AA|A|1225

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AJ
30S RIBOSOMAL PROTEIN S10
Chain AM
30S RIBOSOMAL PROTEIN S13
Chain AN
30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain AS
30S RIBOSOMAL PROTEIN S19
Chain AY
TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM
Chain AZ
TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM

Coloring options:


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