J3_4V8X_071

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4V8X|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8X_071 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2164

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8X|1|AA|C|990
4V8X|1|AA|U|991
4V8X|1|AA|U|992
4V8X|1|AA|G|993
*
4V8X|1|AA|C|1045
4V8X|1|AA|A|1046
4V8X|1|AA|G|1047
*
4V8X|1|AA|C|1210
4V8X|1|AA|U|1211
4V8X|1|AA|U|1212
4V8X|1|AA|A|1213
4V8X|1|AA|C|1214
4V8X|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AY

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM

Chain AZ

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM