J3_4V8Y_003
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8Y|1|B2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_003 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1135
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B2|C|1037
4V8Y|1|B2|U|1038
4V8Y|1|B2|A|1039
*
4V8Y|1|B2|U|1079
4V8Y|1|B2|U|1080
4V8Y|1|B2|A|1081
4V8Y|1|B2|C|1082
4V8Y|1|B2|G|1083
*
4V8Y|1|B2|C|1090
4V8Y|1|B2|A|1091
4V8Y|1|B2|A|1092
4V8Y|1|B2|A|1093
4V8Y|1|B2|G|1094
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A0
- 40S RIBOSOMAL PROTEIN S26-A
- Chain A1
- 40S RIBOSOMAL PROTEIN S27-A
- Chain AA
- 40S RIBOSOMAL PROTEIN S0-A
- Chain AC
- 40S RIBOSOMAL PROTEIN S2
- Chain AV
- 40S RIBOSOMAL PROTEIN S21-A
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
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