J3_4V8Y_005
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.0814
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8Y|1|B2|U|1168
4V8Y|1|B2|G|1169
4V8Y|1|B2|G|1170
4V8Y|1|B2|A|1171
*
4V8Y|1|B2|U|1468
4V8Y|1|B2|A|1469
4V8Y|1|B2|C|1470
*
4V8Y|1|B2|G|1574
4V8Y|1|B2|G|1575
4V8Y|1|B2|A|1576
4V8Y|1|B2|A|1577
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AF
- 40S RIBOSOMAL PROTEIN S5
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AS
- 40S RIBOSOMAL PROTEIN S18-A
- Chain AT
- 40S RIBOSOMAL PROTEIN S19-A
- Chain CW
- Transfer RNA; tRNA
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