J3_4V8Y_010
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4V8Y|1|B2|U|1473, 4V8Y|1|B2|G|1539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_010 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.0791
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8Y|1|B2|C|1470
4V8Y|1|B2|A|1471
4V8Y|1|B2|C|1472
4V8Y|1|B2|U|1473
4V8Y|1|B2|G|1474
*
4V8Y|1|B2|C|1533
4V8Y|1|B2|G|1534
4V8Y|1|B2|U|1535
4V8Y|1|B2|G|1536
4V8Y|1|B2|C|1537
4V8Y|1|B2|U|1538
4V8Y|1|B2|G|1539
4V8Y|1|B2|G|1540
*
4V8Y|1|B2|C|1571
4V8Y|1|B2|G|1572
4V8Y|1|B2|A|1573
4V8Y|1|B2|G|1574
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AF
- 40S RIBOSOMAL PROTEIN S5
- Chain AS
- 40S RIBOSOMAL PROTEIN S18-A
- Chain AT
- 40S RIBOSOMAL PROTEIN S19-A
- Chain AZ
- 40S RIBOSOMAL PROTEIN S25-A
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