J3_4V8Y_024
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 4V8Y|1|B2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_024 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.0778
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4V8Y|1|B2|U|633
4V8Y|1|B2|G|634
4V8Y|1|B2|A|635
*
4V8Y|1|B2|U|861
4V8Y|1|B2|A|862
4V8Y|1|B2|A|863
4V8Y|1|B2|U|864
4V8Y|1|B2|A|865
*
4V8Y|1|B2|U|965
4V8Y|1|B2|A|966
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- 40S RIBOSOMAL PROTEIN S27-A
- Chain AH
- 40S RIBOSOMAL PROTEIN S7-A
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
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