J3_4V8Y_026

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Y_026 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0695

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V8Y|1|B2|U|1293
4V8Y|1|B2|G|1294
*
4V8Y|1|B2|U|1303
4V8Y|1|B2|G|1304
4V8Y|1|B2|U|1305
4V8Y|1|B2|C|1306
*
4V8Y|1|B2|G|1318
4V8Y|1|B2|A|1319
4V8Y|1|B2|U|1320
4V8Y|1|B2|A|1321
4V8Y|1|B2|A|1322

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AA

40S RIBOSOMAL PROTEIN S0-A

Chain AC

40S RIBOSOMAL PROTEIN S2

Chain AR

40S RIBOSOMAL PROTEIN S17-A