J3_4V8Y_030
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 4V8Y|1|B5|U|343, 4V8Y|1|B5|A|351, 4V8Y|1|B8|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_030 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0271
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4V8Y|1|B5|C|340
4V8Y|1|B5|G|341
4V8Y|1|B5|A|342
4V8Y|1|B5|U|343
4V8Y|1|B5|A|344
4V8Y|1|B5|G|345
4V8Y|1|B5|C|346
4V8Y|1|B5|G|347
4V8Y|1|B5|A|348
4V8Y|1|B5|A|349
4V8Y|1|B5|C|350
4V8Y|1|B5|A|351
4V8Y|1|B5|A|352
4V8Y|1|B5|G|353
4V8Y|1|B5|U|354
4V8Y|1|B5|A|355
4V8Y|1|B5|C|356
*
4V8Y|1|B5|G|363
4V8Y|1|B5|G|364
4V8Y|1|B5|A|365
4V8Y|1|B5|A|366
4V8Y|1|B5|A|367
4V8Y|1|B5|G|368
*
4V8Y|1|B8|C|21
4V8Y|1|B8|U|22
4V8Y|1|B8|U|23
4V8Y|1|B8|G|24
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BY
- 60S RIBOSOMAL PROTEIN L26-A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: