J3_4V8Y_031
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_031 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0412
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4V8Y|1|B5|A|369
4V8Y|1|B5|U|370
4V8Y|1|B5|G|371
4V8Y|1|B5|A|372
4V8Y|1|B5|A|373
4V8Y|1|B5|A|374
4V8Y|1|B5|A|375
4V8Y|1|B5|G|376
*
4V8Y|1|B5|C|403
4V8Y|1|B5|G|404
*
4V8Y|1|B8|C|19
4V8Y|1|B8|U|20
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BY
- 60S RIBOSOMAL PROTEIN L26-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
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