J3_4V8Y_038

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Y_038 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0577

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

4V8Y|1|B5|A|1654
4V8Y|1|B5|G|1655
4V8Y|1|B5|A|1656
4V8Y|1|B5|C|1657
4V8Y|1|B5|G|1658
*
4V8Y|1|B5|C|1791
4V8Y|1|B5|C|1792
*
4V8Y|1|B5|G|1796
4V8Y|1|B5|A|1797
4V8Y|1|B5|A|1798
4V8Y|1|B5|A|1799
4V8Y|1|B5|A|1800
4V8Y|1|B5|U|1801

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain Bg

60S RIBOSOMAL PROTEIN L34-A