J3_4V8Y_039
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 4V8Y|1|B5|C|2760, 4V8Y|1|B5|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_039 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.039
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V8Y|1|B5|G|2651
4V8Y|1|B5|U|2652
4V8Y|1|B5|C|2653
*
4V8Y|1|B5|G|2754
4V8Y|1|B5|C|2755
4V8Y|1|B5|C|2756
4V8Y|1|B5|U|2757
4V8Y|1|B5|A|2758
4V8Y|1|B5|U|2759
4V8Y|1|B5|C|2760
4V8Y|1|B5|G|2761
4V8Y|1|B5|A|2762
4V8Y|1|B5|U|2763
4V8Y|1|B5|C|2764
4V8Y|1|B5|C|2765
*
4V8Y|1|B5|G|2793
4V8Y|1|B5|G|2794
4V8Y|1|B5|U|2795
4V8Y|1|B5|G|2796
4V8Y|1|B5|C|2797
4V8Y|1|B5|C|2798
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
- Chain CW
- Transfer RNA; tRNA
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